This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001EC5H.1

Iran/LOC_001EC5H.1/2011
S. Chinikar, T. Jalali, S. Khakifirouz & N. Shahhosseini

Pasteur Institute of Iran

Sample details

Collection date
2011
Earliest release date
2015-10-31
Sampling location
Iran
Isolate name
Iran-Qom58

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2015-10-31
INSDC accession S

Host

Host

Submission details

Submission ID
KP075668.1.S
Submitting group
Date submitted
2026-09-09 16:36:40 UTC
Date released
2026-09-09 16:38:44 UTC

Lineage

Segment S Lineage
IV.1

Files

Annotations

Alignment and QC

Total SNPs S
61
Length S
475 (28.4%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • C166T
  • G169A
  • T172C
  • C178A
  • T182C
  • G190A
  • G196A
  • T199C
  • C208T
  • C217T
  • G229A
  • C235T
  • A268C
  • G271A
  • T289C
  • G292A
  • C295T
  • A298C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V83A
  • NP:D116E
  • NP:T124S
  • NP:G125N
Deletions
N/A
Insertions
N/A

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