This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DPCU.1

Display Name: China/LOC_001DPCU.1/2014
M. M. Chen, H. F. Chen & M. Chen

Sample details

Collection date
2014
Collection date (lower bound)
2014-01-01
Collection date (upper bound)
2014-12-31
Earliest release date
2025-04-16
Collection country
China
Collection subdivision level 1
Nanning
Isolate name
CVA16_B1a_14NN15302

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Guangxi Zhuang Autonomous Region Center for Disease Control and Prevention, Pathogenic Microorganism Laboratory

INSDC

NCBI release date
2025-04-16
INSDC accession CV-A16

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics CV-A16

Length CV-A16
891
Total SNPs CV-A16
205
Total inserted nucs CV-A16
0
Total deleted nucs CV-A16
0
Total ambiguous nucs CV-A16
0
Total unknown nucs CV-A16
0
Total frame shifts CV-A16
0
Completeness CV-A16
12.02%

Submission details

Submission ID
PV466959.1.CV-A16
Submitting group
Date submitted
2025-11-10 19:05:27 UTC
Date released
2025-11-10 19:52:42 UTC

Clade

Clade CV-A16
B1

Genotype

Genotype
CV-A16

Files

Annotations

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2448G
  • G2452C
  • G2453C
  • A2454C
  • T2469C
  • C2472T
  • G2475A
  • G2476A
  • C2481G
  • C2483A
  • T2485A
  • C2486A
  • G2489A
  • A2490G
  • T2493G
  • G2494A
  • G2495A
  • T2499C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U05876.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

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