This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DP74.1

USA/LOC_001DP74.1/2017-01-01
P. Dykema, N. Hanson, Q. Yang, D. Lucas, S. Jr. Grimmet, J. Johnson & K. Waterman

Washington State Department of Health Public Health Labs, Division of Disease Control and Statistics

Sample details

Collection date
2017
Earliest release date
2026-04-14
Sampling location
USA (Oregon)
Isolate name
WNV/USA/WAPHL-519470/2017

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2026-04-14
NCBI update date
2026-04-14
INSDC accession
BioProject accession
BioSample accession

Submission details

Submission ID
PZ266566.1
Submitting group
Date submitted
2026-10-05 17:01:24 UTC
Date released
2026-10-05 17:17:55 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
78
Total deleted nucs
13
Length
10797 (98%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:T105I
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:R41K
  • NS4A:V85T
  • NS5:V49A
  • NS5:K177R
  • NS5:K314R
  • env:K93R
  • env:T123A
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C600T
  • A630G
  • C660T
  • G792A
  • A1320G
  • A1333G
  • T1442C
  • C1465T
  • C1974T
  • T2103C
  • C2187T
  • C2274A
  • T2367A
  • C2448T
  • C2466T
  • G2661A
  • C2783T
  • T3093C
Deletions
10417-10429
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:T105I

NS4A

  • NS4A:R41K
  • NS4A:A85T

NS5

  • NS5:V49A
  • NS5:K314R

env

  • env:T123A
  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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