This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DLA1.1

Display Name: Spain/LOC_001DLA1.1/2016-08
A. Negredo, F. de la Calle-Prieto, E. Palencia-Herrejon, M. Mora-Rillo, J. Astray-Mochales, M. P. Sanchez-Seco, E. Bermejo Lopez, J. Menarguez, A. Fernandez-Cruz, B. Sanchez-Artola, E. Keough-Delgado, E. Ramirez de Arellano, F. Lasala, J. Milla, J. L. Fraile, M. Ordobas Gavin, A. Martinez de la Gandara, L. Lopez Perez, D. Diaz-Diaz, M. A. Lopez-Garcia, P. Delgado-Jimenez, A. Martin-Quiros, E. Trigo, J. C. Figueira, ..., A. I. Negredo

Sample details

Collection date
2016-08
Collection date (lower bound)
2016-08-01
Collection date (upper bound)
2016-08-31
Earliest release date
2017-07-27
Collection country
Spain
Isolate name
201643792

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-13 18:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Institute of Health 'Carlos III', Virology

INSDC

NCBI release date
2017-07-27
INSDC accession S

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics S

Length S
592
Total SNPs S
42
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
35.41%
Total stop codons S
0

Submission details

Submission ID
KY492290.1.S
Submitting group
Date submitted
2026-02-13 18:06:37 UTC
Date released
2026-02-13 18:10:43 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C178A
  • S:T181C
  • S:G189A
  • S:T199C
  • S:G202A
  • S:G229A
  • S:C235T
  • S:A247G
  • S:G271A
  • S:C295T
  • S:A298G
  • S:A322G
  • S:A327G
  • S:G346A
  • S:A355G
  • S:A358C
  • S:C370T
  • S:G397A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R45K
  • NP:K91R
  • NP:T124A
  • NP:G125N
  • NP:L179Q
  • NP:H195R
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue