This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DGR8.1

unknown/SAYO_5073_2005/2005-07-15
N. K. Duggal, W. K. Reisen, Y. Fang, R. M. Newman, X. Yang, G. D. Ebel, A. C. Brault & A. Brault

Centers for Disease Control and Prevention, Division of Vector-Borne Infectious Diseases

Sample details

Collection date
2005-07-15
Earliest release date
2015-08-08
Isolate name
SAYO_5073_2005

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-12 21:12insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2015-08-08
NCBI update date
2015-08-08
INSDC accession

Host

Host

Submission details

Submission ID
KR349008.1
Submitting group
Date submitted
2026-06-12 21:11:56 UTC
Date released
2026-06-12 21:26:10 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
42
Total deleted nucs
101
Length
10282 (94.1%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:A198S
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:M29I
  • NS5:K177R
  • capsid:P8R
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C119G
  • A630G
  • C660T
  • T1442C
  • C1465T
  • C1494T
  • C2466T
  • C2493T
  • C3570T
  • C4107T
  • A4146G
  • C4272T
  • T4542C
  • A4773G
  • C4803T
  • C4827T
  • C5034T
  • G5203T
Deletions

16-116
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:A198S

NS4B

  • NS4B:M29I

capsid

  • capsid:P8R

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

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