This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001DD0U.1

Pakistan/LOC_001DD0U.1/2002
F. J. Burt, J. T. Paweska, B. Ashkettle & R. Swanepoel

NHLS/UFS, Medical Virology

Sample details

Collection date
2002
Earliest release date
2008-12-30
Sampling location
Pakistan
Isolate name
SPU 246/02/20

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2008-12-30
INSDC accession L

Host

Host

Submission details

Submission ID
FJ435384.1.L
Submitting group
Date submitted
2026-07-17 10:33:46 UTC
Date released
2026-07-17 10:35:49 UTC

Files

Annotations

Alignment and QC

Total SNPs L
126
Length L
754 (6.23%)

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G2174A
  • T2182C
  • G2187A
  • A2188G
  • A2197T
  • C2206T
  • A2209G
  • A2218G
  • T2227A
  • G2233A
  • G2236A
  • G2251A
  • A2254G
  • A2260G
  • A2275G
  • C2287T
  • T2290A
  • G2302A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:V700I
  • RdRp:R704K
  • RdRp:G762E
  • RdRp:R764K
  • RdRp:L765S
  • RdRp:K769G
  • RdRp:R770K
  • RdRp:G772E
  • RdRp:A775T
  • RdRp:E776G
  • RdRp:G778D
  • RdRp:N779S
  • RdRp:I783A
  • RdRp:T784A
  • RdRp:S788G
  • RdRp:S789P
  • RdRp:S792L
  • RdRp:K809R
Deletions
N/A
Insertions
N/A

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