This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001D4H2.1

Display Name: Denmark/LOC_001D4H2.1/2022-08-19
M. Bisseux, A. Mirand, C. Henquell, J.-L. Bailly, S. E. Midgley, S. Barzinci & K. T. Franck

Sample details

Collection date
2022-08-19
Collection date (lower bound)
2022-08-19
Collection date (upper bound)
2022-08-19
Earliest release date
2025-07-12
Collection country
Denmark
Isolate name
S3_DK2205_C1_COP_DNK_19_08_2022

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:06insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The Danish WHO National Reference Laboratory for Poliovirus, Statens Serum Institut, Department of Virus & Microbiological Special Diagnostics

INSDC

NCBI release date
2025-07-12
INSDC accession EV-A71

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics EV-A71

Length EV-A71
462
Total SNPs EV-A71
76
Total inserted nucs EV-A71
0
Total deleted nucs EV-A71
0
Total ambiguous nucs EV-A71
2
Total unknown nucs EV-A71
0
Total frame shifts EV-A71
0
Completeness EV-A71
6.21%

Submission details

Submission ID
PQ365558.1.EV-A71
Submitting group
Date submitted
2025-11-10 19:05:27 UTC
Date released
2025-11-10 19:51:36 UTC

Clade

Clade EV-A71
C1-like

Genotype

Genotype
EV-A71

Files

Annotations

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • G2465A
  • T2471C
  • T2483C
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • T2513A
  • C2519T
  • C2527A
  • A2528G
  • G2529A
  • C2534G
  • G2540A
  • C2543T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions
    Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue