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LOC_001CPS1.1
Download
Download FASTA
Download metadata TSV
Display Name: Taiwan/LOC_001CPS1.1/2002-04
H. Y. Wang,
K. C. Tsao,
C. H. Hsieh,
L. M. Huang,
T. Y. Lin,
G. W. Chen,
S. R. Shih,
L. Y. Chang &
L.-Y. Chang
Sample details
Collection date
2002-04
Collection date (lower bound)
2002-04-01
Collection date (upper bound)
2002-04-30
Earliest release date
2010-12-11
Collection country
Taiwan
Isolate name
TW-1893-02
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-12-05 17:46
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National Taiwan University and Hospital, Department of Pediatrics
INSDC
NCBI release date
2010-12-11
NCBI update date
2016-07-25
INSDC accession
HQ283717.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics
Length
2738
Total SNPs
688
Total inserted nucs
114
Total deleted nucs
1537
Total ambiguous nucs
0
Total unknown nucs
254
Total frame shifts
3
Frame shifts
[{'cdsName': 'VP3', 'nucRel': {'begin': 82, 'end': 387}, 'nucAbs': [{'begin': 1794, 'end': 2090}], 'codon': {'begin': 28, 'end': 126}, 'gapsLeading': {'begin': 26, 'end': 28}, 'gapsTrailing': {'begin': 126, 'end': 126}}, {'cdsName': 'VP3', 'nucRel': {'begin': 511, 'end': 533}, 'nucAbs': [{'begin': 2212, 'end': 2234}], 'codon': {'begin': 167, 'end': 174}, 'gapsLeading': {'begin': 163,...
Show more
Completeness
52.74%
Stop codons
[{'cdsName': 'VP3', 'codon': 192}, {'cdsName': 'VP3', 'codon': 199}]
Total stop codons
2
Submission details
Submission ID
HQ283717.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-12-05 17:46:11 UTC
Date released
2025-12-05 18:12:20 UTC
Clade
Clade EV-A71
B4
Genotype
Genotype
EV-A71
Files
Annotations
LOC_001CPS1.1.embl
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
G
1776
C
C
1779
G
A
1784
G
T
1786
C
G
1787
T
C
1788
T
C
1789
G
C
1797
A
C
1799
G
C
1801
A
A
1803
T
C
1804
T
C
1811
T
A
1812
T
T
1814
C
A
1816
C
A
1818
G
T
1819
G
Show more
Deletions
1791-1794, 1806-1808, 2070, 2148-2153, 2202-2212, 2235, 2283-2285, 3879-5386
Insertions
ins_1910:CTG, ins_1961:CT, ins_2036:GTGG, ins_2090:CG, ins_2441:GGA, ins_3275:GCCGGCAACTCCATCAAACCGACCGGCACTAGTCGTACTGCCATTACTACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Amino acid mutations
Mutations called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
N
57
D
2A:
R
68
K
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
A
2A:
S
129
N
3C
3C:
A
18
V
3C:
I
36
V
3C:
I
54
V
3C:
V
56
I
3C:
T
79
I
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
I
109
M
3C:
P
144
A
3C:
I
158
V
3C:
A
169
G
3C:
E
182
V
VP1
VP1:
K
18
R
VP1:
P
22
Q
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
43
E
VP1:
A
58
T
VP1:
K
98
E
VP1:
R
145
Q
VP1:
D
164
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
184
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
249
V
VP1:
S
275
A
VP3
VP3:
T
148
N
VP3:
A
149
P
VP3:
M
150
N
VP3:
L
151
C
VP3:
T
153
A
VP3:
V
155
A
VP3:
I
156
F
VP3:
W
157
N
VP3:
D
158
P
VP3:
F
159
E
VP3:
L
161
S
VP3:
Q
162
V
VP3:
H
176
P
VP3:
Y
177
F
VP3:
F
186
D
VP3:
D
187
N
VP3:
Y
189
R
VP3:
T
190
I
Show more
Deletions
VP3:164-167, VP3:175
Insertions
ins_VP1:0:X, ins_VP1:297:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX, ins_VP3:165:A, ins_VP3:170:RLL, ins_VP3:190:V, ins_VP3:198:SGV, ins_VP3:209:CTVNL
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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