This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AUQ4.1

Netherlands/LOC_001AUQ4.1/2018-11-01
A. Meijer, K. S. M. Benschop, S. van den Brink, J. Cremer, G. A. Donker, P. Overduin, H. Vennema & E. Duizer

National Institute for Public Health and the Environment, Centre for Infectious Diseases Research, Diagnostics and laboratory Surveillance

Sample details

Collection date
2018-11-01
Earliest release date
2020-02-08
Sampling location
Netherlands
Isolate name
4311801122_NL18

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-02-08
NCBI update date
2020-02-08
INSDC accession

Host

Host

Submission details

Submission ID
MN726791.1
Submitting group
Date submitted
2026-05-20 16:24:17 UTC
Date released
2026-05-20 16:33:13 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
46
Total deleted nucs
3
Length
284 (3.9%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G2589T
  • G2592A
  • G2595A
  • G2614A
  • C2626T
  • G2631A
  • A2639G
  • G2655A
  • T2661C
  • G2662A
  • C2670T
  • A2671G
  • G2672A
  • C2673A
  • G2677C
  • G2679A
  • A2680G
  • C2681T
Deletions

2806-2808
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:A92T
  • VP1:S95E
  • VP1:G97R
  • VP1:T98V
  • VP1:H99D
  • VP1:F103Y
  • VP1:N142S
  • VP1:D144N
Deletions

VP1

VP1:140
Insertions
N/A

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