This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AT76.1

Thailand/LOC_001AT76.1/2017-02-27
K. Rojjanadumrongkul, K. Kumthip, P. Khamrin & N. Maneekarn

Faculty of Medicine, Chiang Mai University, Department of Microbiology

Sample details

Collection date
2017-02-27
Earliest release date
2020-08-11
Sampling location
Thailand
Isolate name
CMH-ST14-17

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:25insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2020-08-11
NCBI update date
2020-08-11
INSDC accession

Host

Host

Submission details

Submission ID
MN699163.1
Submitting group
Date submitted
2026-05-20 16:24:17 UTC
Date released
2026-05-20 16:33:13 UTC

Clade

Clade CV-A10
C

Genotype

Genotype
CV-A10

Alignment and QC

Total SNPs
58
Length
222 (3%)

Nucleotide mutations

Mutations called relative to the AY421767.1 reference

Substitutions

  • G2668A
  • G2670C
  • T2673C
  • A2676C
  • G2678A
  • T2679C
  • T2682C
  • A2691C
  • A2697T
  • T2700A
  • G2703A
  • T2709A
  • T2712A
  • C2715T
  • T2718C
  • A2721C
  • T2724A
  • C2727T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY421767.1 reference

Substitutions

VP1

  • VP1:A78T
  • VP1:S81N
  • VP1:V107T
  • VP1:F148Y
Deletions
N/A
Insertions
N/A

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