This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ASA1.1

USA/LOC_001ASA1.1/2017-07-04
N. Grubaugh, N. Matteson, K. Gangavarupa, U. Balasuriya, R. Christofferson, T. Harden, Z. Mekuria, L. Peak, A. Roy, K. Strother & K. Andersen

The Scripps Research Institute, Department of Immunology and Microbiology

Sample details

Collection date
2017-07-04
Earliest release date
2023-08-02
Sampling location
USA (Allen, Louisiana)
Isolate name
WNV/mosquito/Allen-LA-USA/2017-07-04/W1379

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2023-08-02
NCBI update date
2023-08-02
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
OQ721455.1
Submitting group
Date submitted
2026-07-17 10:33:35 UTC
Date released
2026-07-17 10:54:56 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
78
Total unknown nucs
456
Length
10302 (89.3%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS1:I194V
  • NS2A:R188K
  • NS2B:A103V
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS4B:I240M
  • NS5:K177R
  • env:K93R
  • prM:V22A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • C435T
  • T530C
  • A630G
  • G1662A
  • C1750T
  • A1848G
  • C2109T
  • T2226C
  • C2271T
  • C2304T
  • A2322G
  • C2466T
  • G2544A
  • A3049G
  • C3501T
  • T3528C
  • C3637T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS1

  • NS1:I194V

NS2A

  • NS2A:R188K

NS4B

  • NS4B:I240M

prM

  • prM:V22A
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue