This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AS85.1

China/LOC_001AS85.1/2018
X. Tang

Chongqing Medical University, Academy of pediatrics

Sample details

Collection date
2018
Earliest release date
2023-01-30
Sampling location
China
Isolate name
CA16-18043

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-06-10 12:22insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-01-30
NCBI update date
2023-01-30
INSDC accession

Host

Host

Submission details

Submission ID
OP351800.1
Submitting group
Date submitted
2026-06-10 12:21:58 UTC
Date released
2026-06-10 12:29:16 UTC

Clade

Clade CV-A16
B1b

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
174
Length
725 (9.78%)

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2496C
  • T2499C
  • G2500T
  • G2502C
  • C2503T
  • A2508T
  • T2509G
  • C2511G
  • T2512A
  • A2514G
  • G2517A
  • G2521C
  • A2522T
  • C2529A
  • C2532T
  • C2541T
  • A2542G
  • T2544G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:A19S
  • VP1:S22A
  • VP1:L23M
  • VP1:E26L
  • VP1:N33E
  • VP1:E36S
  • VP1:L43V
  • VP1:Q59S
  • VP1:E61K
  • VP1:T79A
  • VP1:M119L
  • VP1:A139V
  • VP1:I179V
  • VP1:L183M
  • VP1:A213E
  • VP1:P215L
  • VP1:S217A
  • VP1:A220L
  • VP1:I235V
Deletions
N/A
Insertions
N/A

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