This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001AS69.1

South_Africa/LOC_001AS69.1/2017-03-01
C. MacIntyre

University of Pretoria, Medical Virology

Sample details

Collection date
2017-03
Earliest release date
2022-11-21
Sampling location
South Africa
Isolate name
ZRU139/17/1

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2022-11-21
NCBI update date
2022-11-21
INSDC accession

Host

Host

Submission details

Submission ID
OL790164.1
Submitting group
Date submitted
2026-10-05 17:01:18 UTC
Date released
2026-10-05 17:14:24 UTC

Lineage

Lineage
2

Files

Annotations

Alignment and QC

Total SNPs
321
Total unknown nucs
1
Length
1440 (13%)
Amino Acid Mutations from founder clade
  • env:V43I
  • env:K71R
  • env:T159I
  • env:I196M
  • env:A261V
  • env:E293A
  • env:A316V
  • env:E326K
  • env:K337R
  • env:H395Y
  • env:A419V
  • env:M483V
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • T1000C
  • A1005G
  • A1020T
  • G1029T
  • T1033C
  • T1038G
  • C1041G
  • C1050T
  • C1053T
  • C1056T
  • G1059T
  • T1062C
  • C1065A
  • T1071A
  • G1074A
  • T1083A
  • C1089T
  • G1093A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

env

  • env:V43I
  • env:E55D
  • env:T64S
  • env:K71R
  • env:D83E
  • env:R93K
  • env:S122T
  • env:I126T
  • env:R128W
  • env:T129I
  • env:L131Q
  • env:V159I
  • env:L167F
  • env:A172S
  • env:I196M
  • env:N199S
  • env:T205S
  • env:T208A
Deletions
N/A
Insertions
N/A

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