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LOC_001AHW3.1
Download
Download FASTA
Download metadata TSV
USA/LOC_001AHW3.1/2006
T. F. F. Ng,
S.-W. W. Chern,
E. Reynolds,
C. J. Castro &
W. A. Nix
Centers for Disease Control and Prevention, Polio and Picornavirus Laboratory Branch
Sample details
Collection date
2006
Earliest release date
2019-08-26
Sampling location
USA (WI)
Isolate name
USA/WI/2006-23227
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-20 16:24
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2019-08-26
NCBI update date
2019-09-03
INSDC accession
MN240503.1
BioProject accession
PRJNA322324
Host
Host
human (Homo sapiens)
Submission details
Submission ID
MN240503.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-20 16:23:28 UTC
Date released
2026-05-20 16:33:13 UTC
Clade
Clade EV-D68
A1
Genotype
Genotype
EV-D68
Alignment and QC
Total SNPs
820
Total inserted nucs
1
Total deleted nucs
27
Length
7341 (100%)
Nucleotide mutations
Mutations called relative to the
AY426531.1
reference
Substitutions
T
11
C
C
12
T
T
28
C
C
62
T
A
88
T
T
89
C
C
95
T
C
101
T
C
114
T
T
118
C
C
122
T
A
124
G
C
156
T
T
158
C
T
187
C
C
203
T
C
204
T
T
230
A
Show more
Deletions
679-702, 2806-2808
Insertions
ins_26:C
Amino acid substitutions
Substitutions called relative to the
AY426531.1
reference
Substitutions
2A
2A:
I
22
T
2A:
R
65
K
2A:
I
71
V
2A:
V
144
A
2B
2B:
I
64
V
2C
2C:
T
34
N
2C:
K
58
S
2C:
R
72
Q
2C:
S
98
A
2C:
A
102
T
2C:
I
154
V
2C:
T
211
I
2C:
N
273
D
2C:
T
275
A
2C:
V
304
I
3A
3A:
A
13
T
3A:
V
53
L
3C
3C:
V
30
I
3C:
I
46
T
3C:
I
74
V
3C:
L
77
M
3C:
C
93
Y
3D
3D:
M
11
V
3D:
V
88
I
3D:
N
95
S
3D:
E
101
D
3D:
S
135
T
3D:
K
139
R
3D:
I
212
V
3D:
V
277
I
3D:
I
278
V
3D:
K
307
R
3D:
V
349
I
3D:
I
360
V
VP1
VP1:
S
1
L
VP1:
N
2
D
VP1:
H
5
N
VP1:
G
6
A
VP1:
V
13
I
VP1:
T
46
S
VP1:
G
76
S
VP1:
K
84
R
VP1:
S
95
E
VP1:
G
97
R
VP1:
H
99
D
VP1:
I
131
V
VP1:
N
140
S
VP1:
G
141
S
VP1:
N
142
S
VP1:
M
148
T
VP1:
K
168
E
VP1:
E
169
K
Show more
VP2
VP2:
S
59
A
VP2:
R
67
K
VP2:
S
73
T
VP2:
N
74
E
VP2:
Y
98
H
VP2:
H
135
Y
VP2:
D
136
N
VP2:
T
138
N
VP2:
G
142
E
VP2:
N
144
T
VP2:
R
151
E
VP2:
N
156
S
VP2:
I
167
L
VP2:
V
195
A
VP2:
V
211
I
VP2:
M
222
V
VP2:
V
225
M
VP3
VP3:
V
24
A
VP3:
I
40
V
VP3:
M
46
V
VP3:
I
47
V
VP3:
D
59
E
VP3:
G
60
N
VP3:
N
62
V
VP3:
E
65
Q
VP3:
R
68
K
VP3:
Q
74
L
VP3:
A
75
T
VP3:
L
77
V
VP3:
I
163
V
VP3:
I
166
V
VP3:
S
180
N
VP3:
D
208
N
VP3:
I
216
V
VP3:
G
234
R
Deletions
VP1
VP1:144
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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