This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_001ABH1.1

Mali/LOC_001ABH1.1/2013-08
V. L. Baillie, D. P. Moore, A. Mathunjwa, P. Morailane, E. A. F. Simoes & S. A. Madhi

University of the Witwatersrand, Respiratory and Meningeal Pathogens Unit

Sample details

Collection date
2013-08
Earliest release date
2019-07-15
Sampling location
Mali
Isolate name
MALI_Case_102

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 06:42insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2019-07-15
NCBI update date
2019-07-15
INSDC accession

Host

Host

Submission details

Submission ID
MK858988.1
Submitting group
Date submitted
2026-05-09 06:42:20 UTC
Date released
2026-05-09 07:08:44 UTC

Clade

Clade EV-D68
A2/D

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
123
Total inserted nucs
3
Total deleted nucs
7
Length
394 (5.4%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • G163T
  • C164T
  • C177T
  • G186C
  • T187A
  • G188A
  • G189A
  • T190G
  • G192T
  • T193G
  • G197T
  • A198G
  • C205A
  • C208A
  • T211G
  • T212C
  • G213A
  • T223G
Deletions

200, 201, 294, 365, 384-386
Insertions

ins_170:T, ins_224:G, ins_405:T

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions
N/A
Deletions
N/A
Insertions
N/A

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