This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019Z1E.1

Pakistan/LOC_0019Z1E.1/2020
S. M. Chohan, N. Jamil, W. H. Naqvi & S. Khan

Centers of Excellence in Sciences and Applied Technology, Molecular Biology Division

Sample details

Collection date
2020
Earliest release date
2024-05-23
Sampling location
Pakistan
Isolate name
CCHFV-K12-2020-2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2024-05-23
INSDC accession S

Submission details

Submission ID
PP801020.1.S
Submitting group
Date submitted
2026-03-10 17:59:38 UTC
Date released
2026-03-10 18:09:00 UTC

Host

Host

Lineage

Segment S Lineage
IV.2

Files

Annotations

Alignment and QC

Total SNPs S
58
Length S
477 (28.5%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • G1030A
  • G1033T
  • G1036C
  • C1048T
  • T1051C
  • G1054A
  • A1057G
  • G1066A
  • A1072G
  • T1096A
  • T1099C
  • C1100T
  • G1102A
  • C1141T
  • C1147T
  • T1153C
  • G1165A
  • T1174C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

NP

  • NP:V436I
Deletions
N/A
Insertions
N/A

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