This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_0019YSY.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_0019YSY.1/2020-07-27
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2020-07-27
Earliest release date
2024-10-26
Sampling location
Turkey
Isolate name
CCHFV_16
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-10-26
INSDC accession L
PP735354.1
INSDC accession M
PP735353.1
INSDC accession S
PP735352.1
Submission details
Submission ID
PP735354.1.L/PP735353.1.M/PP735352.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:38 UTC
Date released
2026-03-10 18:09:00 UTC
Host
Host
Homo sapiens
Lineage
Segment S Lineage
V
Files
Annotations
LOC_0019YSY.1.embl
Alignment and QC
Total SNPs L
530
Total ambiguous nucs L
9
Length L
5062 (41.7%)
Variant L
False
Total SNPs M
481
Total ambiguous nucs M
19
Length M
3055 (56.6%)
Variant M
False
Total SNPs S
221
Total ambiguous nucs S
5
Length S
1498 (89.3%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
254
A
A
262
G
G
264
A
C
265
T
A
268
G
C
276
T
A
310
G
C
313
T
G
315
A
A
316
G
G
328
A
C
331
T
C
332
T
C
346
T
A
376
G
A
385
T
A
388
G
T
394
C
Show more
M
A
1273
G
C
1274
T
A
1277
G
G
1280
A
C
1292
T
T
1299
C
G
1301
A
A
1303
G
G
1304
A
G
1310
A
A
1311
G
T
1325
C
G
1331
A
A
1337
G
C
1352
T
C
1355
T
A
1358
G
G
1359
A
Show more
S
T
79
C
A
81
G
A
85
G
G
99
A
G
100
A
A
109
G
C
115
T
A
121
G
G
134
A
C
142
T
T
157
C
C
166
T
G
171
A
T
175
A
C
178
A
T
182
C
C
187
T
G
189
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
N
394
S
GPC:
K
404
R
GPC:
I
407
V
GPC:
V
423
I
GPC:
K
435
N
GPC:
I
445
T
GPC:
A
448
P
GPC:
H
453
R
GPC:
V
459
T
GPC:
F
482
V
GPC:
D
484
N
GPC:
R
507
K
GPC:
R
517
K
GPC:
S
524
G
GPC:
G
543
D
GPC:
E
585
K
GPC:
N
592
T
GPC:
V
598
T
Show more
NP
NP:
N
9
S
NP:
R
15
K
NP:
V
27
M
NP:
S
39
N
NP:
R
45
K
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
S
301
G
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
V
436
I
RdRp
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
RdRp:
A
508
I
RdRp:
V
515
I
RdRp:
K
522
R
Show more
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue