This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019V2G.1

USA/VA_TC_1184-10/2010-01-01
D. Swetnam, S. G. Widen, T. G. Wood, M. Reyna, L. Wilkerson, M. Debboun, D. A. Symonds, D. G. Mead, B. J. Beaty, H. Guzman, R. B. Tesh, A. D. T. Barrett & D. M. Swetnam

University of Texas Medical Branch, Microbiology and Immunology

Sample details

Collection date
2010
Earliest release date
2018-11-19
Sampling location
USA (VA, Norfolk County)
Isolate name
VA_TC_1184-10

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2018-11-19
NCBI update date
2018-11-19
INSDC accession

Host

Host

Submission details

Submission ID
MH166916.1
Submitting group
Date submitted
2026-10-05 17:01:15 UTC
Date released
2026-10-05 17:13:14 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
58
Length
11029 (100%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2A:T52I
  • NS2A:L95F
  • NS2B:A103V
  • NS3:T249P
  • NS3:S334T
  • NS3:I356T
  • NS4A:V85A
  • NS4B:S14I
  • NS5:K177R
  • NS5:K269R
  • capsid:S36N
  • env:K93R
  • env:T126I
  • env:I159A
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • G203A
  • A630G
  • A1401G
  • T1442C
  • C1465T
  • C1773T
  • T1965C
  • C2371T
  • C2466T
  • C2925T
  • T3138C
  • C3372T
  • C3504T
  • C3680T
  • C3808T
  • G3843A
  • C4107T
  • A4146G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS2A

  • NS2A:T52I
  • NS2A:L95F

NS3

  • NS3:S334T

NS4B

  • NS4B:S14I

NS5

  • NS5:K269R

capsid

  • capsid:S36N

env

  • env:V159A
  • env:L167F
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue