This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0019RND.1

Thailand/LOC_0019RND.1/2019-08-15
Z. Xie, P. Khamrin, N. Maneekarn & K. Kumthip

Faculty of Medicine, Chiang Mai University, Department of Microbiology

Sample details

Collection date
2019-08-15
Earliest release date
2023-10-10
Sampling location
Thailand
Isolate name
CMH-R130-19/THA

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-05 16:08insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2023-10-10
NCBI update date
2023-10-10
INSDC accession

Host

Host

Submission details

Submission ID
OR500119.1
Submitting group
Date submitted
2026-03-05 16:08:27 UTC
Date released
2026-03-05 16:23:00 UTC

Clade

Clade CV-A16
B1c

Genotype

Genotype
CV-A16

Alignment and QC

Total SNPs
74
Length
294 (3.97%)
Variant
False

Nucleotide mutations

Mutations called relative to the U05876.1 reference

Substitutions

  • T2634C
  • A2637T
  • A2640G
  • C2643G
  • C2644A
  • G2646A
  • C2658T
  • C2664T
  • T2670A
  • C2679A
  • A2680G
  • G2682C
  • T2685C
  • C2688G
  • C2691T
  • T2694C
  • C2697T
  • T2700C
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the U05876.1 reference

Substitutions

VP1

  • VP1:T79A
  • VP1:M119L
  • VP1:A139I
  • VP1:V156I
  • VP1:A160G
Deletions
N/A
Insertions
N/A

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