This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017PMM.1

USA/LOC_0017PMM.1/2014-09-21
M. M. Prill, R. Dahl, C. Midgley, S.-W. W. Chern, X. Lu, D. Feikin, S. K. Sakthivel, W. A. Nix, J. Watson, S. I. Gerber & M. S. Oberste

Centers for Disease Control and Prevention, Polio and Picornavirus Laboratory Branch

Sample details

Collection date
2014-09-21
Earliest release date
2017-10-22
Sampling location
USA (VA)
Isolate name
USA/VA/2014-20368

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:24insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-10-22
NCBI update date
2017-10-22
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
MF160104.1
Submitting group
Date submitted
2026-05-20 16:23:28 UTC
Date released
2026-05-20 16:31:12 UTC

Clade

Clade EV-D68
B1

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
55
Length
336 (4.56%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • C2529T
  • A2568G
  • T2580C
  • G2586A
  • G2589C
  • G2595T
  • T2596C
  • T2613C
  • G2614A
  • G2619A
  • C2625T
  • C2626T
  • A2628G
  • G2631A
  • A2639G
  • G2655A
  • A2656G
  • G2662A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:T98A
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:N143S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
Deletions
N/A
Insertions
N/A

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