This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017JNQ.1

Viet_Nam/LOC_0017JNQ.1/2014-07-08
T. V. Le, V. T. T. Nguyen, T. T. T. Nguyen, Q. H. Nguyen, H. L. T. Tran, H. T. H. Trinh, T. N. A. Hoang & D. T. Pham

Tay Nguyen Institute of Hygiene and Epidemiology, Virology

Sample details

Collection date
2014-07-08
Earliest release date
2017-07-24
Sampling location
Viet Nam (DakLak)
Isolate name
EV71_HSS14-213_DakLak

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:24insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-07-24
NCBI update date
2017-07-24
INSDC accession

Host

Host

Submission details

Submission ID
MF001426.1
Submitting group
Date submitted
2026-05-20 16:23:28 UTC
Date released
2026-05-20 16:31:12 UTC

Clade

Clade EV-A71
B5

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
165
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • A2447G
  • T2462C
  • T2480C
  • A2491G
  • C2495A
  • C2501T
  • C2503G
  • A2504G
  • T2507C
  • T2508C
  • A2510G
  • T2513G
  • C2525A
  • C2527A
  • G2529A
  • C2534A
  • A2537G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:D31N
  • VP1:K43E
  • VP1:A58T
  • VP1:E77K
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S184T
  • VP1:E244K
  • VP1:S246P
  • VP1:I249V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
Deletions
N/A
Insertions
N/A

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