This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017JH0.1

Viet_Nam/LOC_0017JH0.1/2011-07-19
T. V. Le, T. T. T. Nguyen, V. T. T. Nguyen, Q. H. Nguyen, H. L. T. Tran, H. T. H. Trinh & D. T. Pham

Tay Nguyen Institute of Hygiene and Epidemiology, Virology

Sample details

Collection date
2011-07-19
Earliest release date
2017-07-24
Sampling location
Viet Nam (DakLak)
Isolate name
EV71_HFM11-047_DakLak

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:24insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2017-07-24
NCBI update date
2017-07-24
INSDC accession

Host

Host

Submission details

Submission ID
MF001393.1
Submitting group
Date submitted
2026-05-20 16:23:28 UTC
Date released
2026-05-20 16:31:12 UTC

Clade

Clade EV-A71
C4

Genotype

Genotype
EV-A71

Alignment and QC

Total SNPs
160
Length
891 (12%)

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • G2459A
  • A2460G
  • G2465A
  • C2468T
  • T2471C
  • T2483C
  • T2489C
  • A2491G
  • G2492A
  • C2501T
  • C2503A
  • A2504C
  • T2508C
  • T2513A
  • C2527A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the U22521.1 reference

Substitutions

VP1

  • VP1:I8V
  • VP1:K18R
  • VP1:P22H
  • VP1:P30Q
  • VP1:D31N
  • VP1:E77K
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:S275A
  • VP1:D282N
  • VP1:I284V
  • VP1:T289A
Deletions
N/A
Insertions
N/A

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