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LOC_0017GBF.1
Download
Download FASTA
Download metadata TSV
Uganda/LOC_0017GBF.1/1967
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
1967
Earliest release date
2024-10-26
Sampling location
Uganda
Isolate name
CCHFV_Semunya
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-10-26
INSDC accession L
PP735372.1
INSDC accession M
PP735371.1
INSDC accession S
PP735370.1
Submission details
Submission ID
PP735372.1.L/PP735371.1.M/PP735370.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:05:41 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017GBF.1.embl
Alignment and QC
Total SNPs S
232
Total deleted nucs S
15
Total ambiguous nucs S
3
Length S
1483 (82.8%)
Variant S
False
Total SNPs M
543
Total inserted nucs M
1
Total deleted nucs M
1
Total ambiguous nucs M
7
Total frame shifts M
1
Frame shifts M
GPC:1316-1324(nt:4022-4048)
Length M
3055 (56.4%)
Variant M
False
Total SNPs L
819
Total ambiguous nucs L
22
Total unknown nucs L
54
Length L
5062 (41.2%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
L segment
A
247
C
T
250
C
T
254
A
A
262
G
C
265
T
C
271
T
G
274
A
T
275
G
G
277
A
G
301
A
G
315
A
A
316
G
G
320
A
C
325
T
C
326
T
G
328
A
C
332
T
A
337
C
Show more
M segment
C
1306
T
T
1309
C
A
1312
G
C
1315
T
C
1318
G
T
1321
C
T
1330
C
A
1333
G
A
1336
G
G
1339
A
C
1345
T
A
1351
G
G
1354
A
C
1357
T
A
1372
C
C
1375
T
G
1381
C
C
1382
A
Show more
S segment
A
62
C
A
65
G
A
69
G
G
75
A
A
83
G
A
84
G
A
93
G
A
98
T
A
102
G
A
105
G
G
106
A
A
108
T
C
129
T
C
135
T
C
138
T
T
141
C
C
150
T
T
159
C
Show more
Deletions
M segment
4049
S segment
1523-1537
Insertions
M segment
ins_4021:W
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
OR047158.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
414
M
GPC:
L
436
I
GPC:
I
441
V
GPC:
T
444
S
GPC:
H
447
L
GPC:
A
448
V
GPC:
N
460
D
GPC:
T
464
A
GPC:
K
466
R
GPC:
E
469
K
GPC:
T
471
A
GPC:
H
472
Y
GPC:
I
475
V
GPC:
I
477
M
GPC:
Q
491
L
GPC:
I
496
A
GPC:
T
498
I
GPC:
A
514
T
Show more
NP
NP:
N
8
T
NP:
N
9
S
NP:
K
15
R
NP:
Y
20
F
NP:
G
23
S
NP:
K
45
R
NP:
D
116
G
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
G
NP:
I
277
V
NP:
A
307
P
NP:
Y
311
F
NP:
T
320
S
NP:
Q
370
E
NP:
R
428
K
RdRp
RdRp:
Y
60
N
RdRp:
S
67
A
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
E
87
D
RdRp:
I
114
V
RdRp:
I
131
L
RdRp:
I
157
M
RdRp:
T
163
A
RdRp:
R
166
K
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
201
G
RdRp:
A
202
S
RdRp:
S
205
P
RdRp:
N
206
Y
Show more
Deletions
GPC
GPC:1325
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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