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LOC_0017GAH.1
Download
Download FASTA
Download metadata TSV
Nigeria/LOC_0017GAH.1/1966
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
1966
Earliest release date
2024-10-26
Sampling location
Nigeria
Isolate name
CCHFV_IbAr10200
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-10-26
INSDC accession L
PP735369.1
INSDC accession M
PP735368.1
INSDC accession S
PP735367.1
Submission details
Submission ID
PP735369.1.L/PP735368.1.M/PP735367.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:05:41 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017GAH.1.embl
Alignment and QC
Total SNPs M
325
Total ambiguous nucs M
8
Length M
3055 (55.8%)
Variant M
False
Total SNPs S
111
Total ambiguous nucs S
14
Length S
1498 (82.2%)
Variant S
False
Total SNPs L
7
Total ambiguous nucs L
42
Total unknown nucs L
222
Length L
5062 (39.6%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
C
913
T
G
2536
A
G
3216
A
C
4117
A
C
5054
A
T
5065
A
C
5100
A
M segment
T
1285
C
A
1297
G
A
1300
G
C
1306
G
G
1307
A
T
1312
C
T
1351
C
G
1354
A
C
1363
T
C
1366
T
A
1382
G
C
1386
T
A
1400
G
T
1411
C
C
1422
T
C
1423
T
G
1429
T
A
1433
G
Show more
S segment
A
83
G
A
84
G
A
98
T
A
162
C
A
173
G
C
183
T
A
186
G
A
213
G
T
219
C
G
231
A
A
255
G
T
279
C
G
282
A
G
306
A
G
339
A
C
342
A
T
354
C
A
381
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
V
407
I
GPC:
I
432
V
GPC:
A
433
V
GPC:
I
438
V
GPC:
T
445
I
GPC:
I
449
V
GPC:
Q
453
H
GPC:
H
455
Y
GPC:
T
459
V
GPC:
S
473
N
GPC:
N
484
D
GPC:
R
510
K
GPC:
S
523
P
GPC:
G
524
S
GPC:
V
541
I
GPC:
V
561
I
GPC:
S
592
N
GPC:
I
598
V
Show more
NP
NP:
K
15
R
NP:
Y
20
F
NP:
K
45
R
NP:
A
124
T
NP:
N
125
G
NP:
Q
179
L
NP:
V
246
I
NP:
G
301
S
NP:
R
428
K
NP:
I
436
V
RdRp
RdRp:
G
1047
E
RdRp:
P
1660
T
RdRp:
T
1675
N
Deletions
N/A
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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