This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017FEA.1

France/LOC_0017FEA.1/2014-11
A. Mirand, J. Bailly, H. Peigue-Lafeuille & C. Henquell

Virology laboratory - Reference National Centre for enteroviruses and parechoviruses, University Hospital of Clermont-Ferrand, Laboratoire de Virologie, CHU Clermont-Ferrand, 58, rue montalembert, 63003 Clermont-Ferrand

Sample details

Collection date
2014-11
Earliest release date
2015-01-25
Sampling location
France
Isolate name
CF311065_FRA14

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2015-01-25
NCBI update date
2015-08-04
INSDC accession

Submission details

Submission ID
LN681337.2
Submitting group
Date submitted
2026-08-12 11:46:28 UTC
Date released
2026-08-12 11:55:04 UTC

Clade

Clade EV-D68
B1

Genotype

Genotype
EV-D68

Alignment and QC

Total SNPs
125
Length
927 (12.6%)

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions
  • T2389C
  • C2390T
  • A2392G
  • C2397T
  • G2405C
  • T2421C
  • G2425A
  • G2427C
  • T2433C
  • T2451C
  • T2454C
  • G2463A
  • C2475T
  • C2478T
  • T2499C
  • C2500T
  • T2517A
  • C2529T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the AY426531.1 reference

Substitutions

VP1

  • VP1:S1L
  • VP1:N2D
  • VP1:G6A
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:N143S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E
Deletions
N/A
Insertions
N/A

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