This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017FCE.1

Malaysia/LOC_0017FCE.1/1966-01-01
A. Vazquez, R. Santiago, L. Herrero, J. Moreno, F. Molero, A. Magallanes, P. Sanchez-Seco, J. Figuerola & A. Tenorio

Instituto de Salud Carlos III, Centro Nacional Microbiologia

Sample details

Collection date
1966
Earliest release date
2012-04-30
Sampling location
Malaysia
Isolate name
KUN MP502-66

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2012-04-30
NCBI update date
2016-07-25
INSDC accession

Host

Host

Submission details

Submission ID
HQ840762.1
Submitting group
Date submitted
2026-10-05 17:01:12 UTC
Date released
2026-10-05 17:10:50 UTC

Lineage

Lineage
unassigned

Files

Annotations

Alignment and QC

Total SNPs
329
Total deleted nucs
928
Total frame shifts
1
Frame shifts
NS5:235-905(nt:8383-10395)
Length
1671 (23.6%)
Variant
True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C8388T
  • C8400T
  • C8401T
  • A8403G
  • A8406T
  • A8409G
  • A8418G
  • G8420A
  • C8424T
  • C8436T
  • G8445A
  • A8448G
  • A8454C
  • T8458C
  • C8472A
  • A8473C
  • G8478A
  • G8481C
Deletions
8237-8266, 8270-8382, 10039-10823
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS5

  • NS5:V181Q
Deletions

NS5

NS5:198-234
Insertions
N/A

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