This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017EUG.1

USA/LOC_0017EUG.1/2006-01-01
M. R. Henn, R. M. Newman, J. Levin, C. Malboeuf, M. Casali, C. Russ, N. Lennon, R. Erlich, S. Anderson, K. Rizzolo, L. Green, E. Ryan, Q. Yu, S. Young, A. Berlin, D. Heiman, S. Sykes, M. Koehrsen, D. Borenstein, R. Engels, E. Freedman, M. Gellesch, E. Heilman, C. Howarth, ..., B. Birren

Broad Institute of MIT and Harvard

Sample details

Collection date
2006
Earliest release date
2011-03-12
Sampling location
USA (Illinois)
Isolate name
WNV-1/US/BID-V4383/2006

Data use terms

Data use terms
OPEN
Data use terms URL

INSDC

NCBI release date
2011-03-12
NCBI update date
2016-07-25
INSDC accession
BioProject accession

Host

Host

Submission details

Submission ID
HQ671745.1
Submitting group
Date submitted
2026-10-05 17:01:12 UTC
Date released
2026-10-05 17:10:50 UTC

Lineage

Lineage
1A

Files

Annotations

Alignment and QC

Total SNPs
45
Total deleted nucs
135
Length
10051 (92.4%)
Amino Acid Mutations from founder clade
  • 2K:L15M
  • NS2B:A103V
  • NS3:K210R
  • NS3:T249P
  • NS3:I356T
  • NS4A:V85A
  • NS5:K177R
  • NS5:K459E
  • env:K93R
  • env:T126I
  • env:I159A
Variant
False

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions
  • C340T
  • T429C
  • C435T
  • A630G
  • T867C
  • T945C
  • T1140C
  • G1254A
  • T1442C
  • C1465T
  • G1662A
  • C1750T
  • C2304T
  • C2466T
  • A2997G
  • C3435T
  • T3528C
  • C3969T
Deletions
9063-9065, 9895-10026
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference

Substitutions

NS3

  • NS3:K210R

NS5

  • NS5:K459E

env

  • env:V159A
  • env:L167F
Deletions

NS5

NS5:463, NS5:739-782
Insertions
N/A

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