This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0017D14.1

Display Name: Netherlands/LOC_0017D14.1/2015-11-12
T. K. S. Janssens, S. H. Zhan, P. Overduin, S. M. Alamouti, B. S. Kwok, D. Schmitz, M. A. Qadir & A. Meijer

Sample details

Collection date
2015-11-12
Collection date (lower bound)
2015-11-12
Collection date (upper bound)
2015-11-12
Earliest release date
2020-10-12
Collection country
Netherlands

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
RIVM, Centre for Infectious Disease Research, Diagnostics and Screening (IDS) Department of Endemic and Emerging Viruses (EEV)

INSDC

NCBI release date
2020-10-12
NCBI update date
2020-10-12
INSDC accession
Bioproject accession
Biosample accession
Raw reads accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
893
Total SNPs
172
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
12.05%
Total stop codons
0

Submission details

Submission ID
MN488795.1
Submitting group
Date submitted
2026-02-06 07:30:18 UTC
Date released
2026-02-06 07:42:47 UTC

Clade

Clade EV-A71
C2

Genotype

Genotype
EV-A71

Nucleotide mutations

Mutations called relative to the U22521.1 reference

Substitutions

  • G2441A
  • C2444T
  • A2447G
  • T2462C
  • C2468T
  • G2484A
  • G2488A
  • T2489C
  • A2491G
  • G2492A
  • C2503G
  • T2513G
  • C2519T
  • C2525T
  • C2527A
  • C2534G
  • A2537G
  • G2540A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the U22521.1 reference

    Substitutions

    VP1

  • VP1:V16M
  • VP1:S17N
  • VP1:K18R
  • VP1:P22R
  • VP1:P30Q
  • VP1:K98E
  • VP1:R145E
  • VP1:D167E
  • VP1:P172Q
  • VP1:S183L
  • VP1:S240T
  • VP1:E244K
  • VP1:S246P
  • VP1:I262V
  • VP1:S275A
  • VP1:D282N
  • VP1:T289A
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue