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LOC_0017CL0.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_0017CL0.1/2015-07-20
J. D'Addiego,
N. Wand,
B. Afrough,
T. Fletcher,
Y. Kurosaki,
H. Leblebicioglu &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2015-07-20
Earliest release date
2023-08-15
Sampling location
Turkey
Isolate name
Turkey_2015
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-08-15
INSDC accession L
OQ866633.1
INSDC accession M
OQ866632.1
INSDC accession S
OQ866631.1
Submission details
Submission ID
OQ866633.1.L/OQ866632.1.M/OQ866631.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_0017CL0.1.embl
Alignment and QC
Total SNPs L
1302
Total inserted nucs L
34
Total deleted nucs L
2
Length L
12051 (99.3%)
Variant L
False
Total SNPs M
999
Total inserted nucs M
1
Total deleted nucs M
3
Length M
5203 (95.4%)
Variant M
False
Total SNPs S
249
Total inserted nucs S
7
Length S
1657 (91.4%)
Variant S
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
91
G
G
93
A
C
100
T
A
109
G
T
131
A
T
139
C
C
148
T
T
151
C
T
154
C
T
160
C
T
163
C
T
202
C
A
240
C
T
254
A
A
262
G
G
264
A
C
265
T
A
268
G
Show more
M segment
T
36
A
G
46
A
A
47
G
T
63
C
T
64
C
T
67
A
G
72
C
A
76
G
T
78
C
T
79
C
G
80
A
T
81
C
C
88
T
T
96
C
T
98
C
C
99
T
G
103
A
A
104
G
Show more
S segment
T
16
A
C
31
G
T
33
C
G
34
T
A
51
G
T
63
C
A
65
G
A
69
G
A
93
G
A
98
T
C
99
T
A
105
G
G
118
A
C
126
T
T
141
C
C
150
T
G
155
A
T
159
A
Show more
Deletions
L segment
12093, 12094
M segment
326-328
Insertions
L segment
ins_11924:G, ins_12108:TTCATTATTTGAAGGGTGTGGGGGGAACGATTT
M segment
ins_5167:T
S segment
ins_0:AACACGT
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
Q
GPC:
H
24
L
GPC:
G
26
T
GPC:
N
31
G
GPC:
H
33
N
Show more
NP
NP:
N
9
S
NP:
Y
20
F
NP:
V
27
M
NP:
S
39
N
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
Q
179
L
NP:
D
199
E
NP:
K
265
R
NP:
R
270
K
NP:
A
307
P
NP:
Y
311
F
NP:
V
327
I
NP:
N
419
S
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
I
505
T
Show more
Deletions
GPC
GPC:77
Insertions
N/A
L (unaligned)
M (unaligned)
S (unaligned)
L (aligned)
M (aligned)
S (aligned)
Aligned amino acid sequences
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