This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
CCHF (Multi-Ref)
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
CCHF (Multi-Ref)
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
CCHF (Multi-Ref)
|
Browse data
Submit sequences
Select organism section
Browse data
Submit sequences
LOC_00179UM.1
Download
Download FASTA
Download metadata TSV
Turkey/LOC_00179UM.1/2021
A. T. Kalaycioglu,
T. C. Oguzoglu,
O. Ari,
R. Durmaz,
A. Engin,
M. Bakir &
E. Erdem
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Sample details
Collection date
2021
Earliest release date
2023-02-20
Sampling location
Turkey
Isolate name
TR-SIVAS-C5F-2021
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-10 18:00
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2023-02-20
INSDC accession L
ON623088.1
INSDC accession M
ON623082.1
Submission details
Submission ID
ON623088.1.L/ON623082.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:04:28 UTC
Host
Host
Homo sapiens
Files
Annotations
LOC_00179UM.1.embl
Alignment and QC
Total SNPs M
1076
Total inserted nucs M
3
Total deleted nucs M
3
Length M
5362 (98.3%)
Variant M
False
Total SNPs L
876
Total unknown nucs L
1
Length L
8430 (69.6%)
Variant L
False
Nucleotide mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
L segment
T
3505
C
G
3523
A
T
3529
C
G
3568
A
C
3571
T
C
3572
T
A
3583
G
C
3586
T
T
3589
G
C
3595
T
T
3607
C
G
3627
A
G
3628
A
A
3630
G
T
3646
C
G
3652
A
G
3676
A
A
3679
G
Show more
M segment
T
36
A
G
46
A
A
47
G
T
63
C
T
64
C
T
67
A
G
72
C
A
76
G
T
78
C
G
80
A
T
81
C
A
84
G
C
88
T
T
90
C
T
96
C
T
98
C
C
99
T
G
103
A
Show more
Deletions
M segment
323-325
Insertions
M segment
ins_0:TC, ins_5167:T
Amino acid mutations
Mutations called relative to the
NC_005301.3
&
MH396653.1
references
Substitutions
GPC
GPC:
M
1
T
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
V
9
I
GPC:
F
10
L
GPC:
C
11
Y
GPC:
C
15
L
GPC:
L
17
R
GPC:
K
19
G
GPC:
T
20
A
GPC:
N
21
H
GPC:
P
23
Q
GPC:
H
24
S
GPC:
G
26
A
GPC:
N
31
G
Show more
RdRp
RdRp:
D
1171
E
RdRp:
R
1184
K
RdRp:
K
1185
R
RdRp:
R
1212
K
RdRp:
V
1228
I
RdRp:
K
1282
M
RdRp:
V
1317
I
RdRp:
I
1363
V
RdRp:
N
1367
D
RdRp:
L
1386
I
RdRp:
S
1436
N
RdRp:
M
1448
L
RdRp:
S
1454
A
RdRp:
R
1456
K
RdRp:
I
1458
L
RdRp:
R
1478
K
RdRp:
V
1495
I
RdRp:
V
1577
I
Show more
Deletions
GPC
GPC:80
Insertions
N/A
L (unaligned)
M (unaligned)
L (aligned)
M (aligned)
Aligned amino acid sequences
Report an issue with this sequence or metadata
Create GitHub issue