This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_00177PZ.1

Display Name: Sweden/LOC_00177PZ.1/2018-09-24
R. Dyrdak, E. Hodcroft, R. Neher, J. Albert, L. Thebo, R. Poelman, E. Wollants, H. Niesters, D. Garcia Martinez de Artola, A. Anton Pagarolas, J. Reist, A. Egli & C. Andres

Sample details

Collection date
2018-09-24
Collection date (lower bound)
2018-09-24
Collection date (upper bound)
2018-09-24
Earliest release date
2020-03-16
Collection country
Sweden
Isolate name
EVD68_SWE_101_180924_NFLG

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-02-06 07:30insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karolinska University Hospital, Department of Clinical Microbiology

INSDC

NCBI release date
2020-03-16
NCBI update date
2020-03-16
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
7178
Total SNPs
882
Total inserted nucs
0
Total deleted nucs
35
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Completeness
97.91%
Total stop codons
0

Submission details

Submission ID
MN245444.1
Submitting group
Date submitted
2026-02-06 07:30:18 UTC
Date released
2026-02-06 07:42:47 UTC

Clade

Clade EV-D68
B3

Genotype

Genotype
EV-D68

Nucleotide mutations

Mutations called relative to the AY426531.1 reference

Substitutions

  • A88T
  • T89C
  • C95T
  • C101T
  • C106T
  • T116C
  • A126G
  • T137C
  • A140G
  • A147C
  • T158C
  • G197A
  • C203T
  • T222C
  • A232T
  • T262C
  • G263A
  • C268T
    • Deletions
    688-722
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the AY426531.1 reference

    Substitutions

    2A

  • 2A:I22T
  • 2A:V37I
  • 2A:R65K
  • 2A:A99V
  • 2A:V144A

    • 2B

  • 2B:I64V

    • 2C

  • 2C:K58N
  • 2C:R72Q
  • 2C:S98A
  • 2C:A102M
  • 2C:R264K
  • 2C:N273S
  • 2C:T275A
  • 2C:T277A
  • 2C:V304I

    • 3A

  • 3A:A13T
  • 3A:D15N
  • 3A:V53L

    • 3C

  • 3C:I46T
  • 3C:N50D
  • 3C:C93Y

    • 3D

  • 3D:N6S
  • 3D:M11V
  • 3D:S41P
  • 3D:N95S
  • 3D:E101D
  • 3D:Q130H
  • 3D:V277I
  • 3D:I278V
  • 3D:K307R
  • 3D:I360V

    • VP1

  • VP1:S1I
  • VP1:N2D
  • VP1:V13I
  • VP1:G76S
  • VP1:K84R
  • VP1:N90D
  • VP1:A92T
  • VP1:S95A
  • VP1:G97Q
  • VP1:T98A
  • VP1:H99D
  • VP1:K110R
  • VP1:N142S
  • VP1:N143S
  • VP1:D144N
  • VP1:S145N
  • VP1:M148V
  • VP1:K168E

    • VP2

  • VP2:S59A
  • VP2:S73A
  • VP2:N74T
  • VP2:Y98H
  • VP2:D136N
  • VP2:N144D
  • VP2:R151A
  • VP2:I167L
  • VP2:V195A
  • VP2:V211I
  • VP2:V225M

    • VP3

  • VP3:I40V
  • VP3:M46V
  • VP3:I47V
  • VP3:D59E
  • VP3:G60S
  • VP3:N62V
  • VP3:R68K
  • VP3:V73A
  • VP3:Q74L
  • VP3:A75T
  • VP3:L77V
  • VP3:S180N

    • VP4

  • VP4:I18V
    • Deletions
    None
    Insertions
    None

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