This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_0016DUK.1

Russia/LOC_0016DUK.1/2008
A. Volynkina, A. Burlachenko, Y. Lisitskaya & E. Kotenev

Stavropol State Research Anti-Plague Institute, Laboratory of Natural-Focal Infections

Sample details

Collection date
2008
Earliest release date
2016-06-01
Sampling location
Russia
Isolate name
4561-STV/HU-2008

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-10 18:00insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2016-06-01
INSDC accession L
INSDC accession S

Submission details

Submission ID
KR821964.1.L/KR815285.1.S
Submitting group
Date submitted
2026-03-10 17:59:28 UTC
Date released
2026-03-10 18:03:11 UTC

Host

Host

Files

Annotations

Alignment and QC

Total SNPs L
43
Length L
437 (3.61%)
Variant L
False
Total SNPs S
83
Length S
538 (29.8%)
Variant S
False

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

L segment

  • T131A
  • C148T
  • T151C
  • T154C
  • T160C
  • T163C
  • T202C
  • T218C
  • T229C
  • A240C
  • T241C
  • T253C
  • T254A
  • G264A
  • C265T
  • A268G
  • C276T
  • C284A

S segment

  • C99T
  • G118A
  • C123T
  • C126T
  • T141C
  • C150T
  • G155A
  • T159A
  • T166C
  • C171T
  • A186G
  • C192T
  • T195C
  • C201T
  • A213G
  • T219C
  • C228T
  • G231A
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:V27M
  • NP:S39N
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:V115I
  • NP:Q179L
  • NP:D199E

RdRp

  • RdRp:S19T
  • RdRp:D55A
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67L
  • RdRp:R80K
Deletions
N/A
Insertions
N/A

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