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LOC_000T3CL.1
Download
Download FASTA
Download metadata TSV
Taiwan/LOC_000T3CL.1/2001-05
H. Y. Wang,
K. C. Tsao,
C. H. Hsieh,
L. M. Huang,
T. Y. Lin,
G. W. Chen,
S. R. Shih,
L. Y. Chang &
L.-Y. Chang
National Taiwan University and Hospital, Department of Pediatrics
Sample details
Collection date
2001-05
Earliest release date
2010-12-11
Sampling location
Taiwan
Isolate name
TW-1470-01
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2010-12-11
NCBI update date
2016-07-25
INSDC accession
HQ283562.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
HQ283562.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-20 10:39:16 UTC
Date released
2026-07-20 10:42:17 UTC
Clade
Clade EV-A71
B4
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
681
Total inserted nucs
117
Total deleted nucs
1561
Total unknown nucs
236
Total frame shifts
7
Frame shifts
VP3:20-25(nt:1768-1787),VP3:39-62(nt:1827-1898),VP3:84-108(nt:1962-2036),VP3:121-158(nt:2071-2186),VP3:182-196(nt:2256-2300),VP3:243(nt:2438),VP1:147-285(nt:2875-3293)
Length
2737 (53.3%)
Stop codons
VP3:170,VP3:204
Total stop codons
2
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
C
1759
G
G
1760
C
G
1761
T
A
1765
T
T
1766
C
G
1768
T
T
1771
A
G
1772
T
T
1773
C
C
1774
A
C
1780
T
A
1782
C
A
1784
G
G
1787
T
A
1803
G
C
1804
G
C
1805
G
T
1809
A
Show more
Deletions
1767, 1788-1798, 1884-1888, 1899-1906, 2070, 2148-2153, 2418-2437, 2874, 3879-5386
Insertions
ins_1826:A, ins_1961:CT, ins_2036:GTGG, ins_2090:CG, ins_2186:TCCGT, ins_2255:TT, ins_2300:T, ins_3293:CCGACCGGCACTAGTCGTACTGCCATTACTACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
N
57
D
2A:
R
68
K
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
A
2A:
S
129
N
3C
3C:
A
18
V
3C:
I
36
V
3C:
I
54
V
3C:
V
56
I
3C:
T
79
V
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
I
109
M
3C:
P
144
A
3C:
I
158
V
3C:
A
169
G
3C:
E
182
V
VP1
VP1:
K
18
R
VP1:
P
22
Q
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
43
E
VP1:
A
58
T
VP1:
K
98
E
VP3
VP3:
R
70
Q
VP3:
F
71
S
VP3:
V
73
R
VP3:
S
74
V
VP3:
A
75
D
VP3:
A
77
V
VP3:
G
78
D
VP3:
K
79
E
VP3:
G
80
S
VP3:
Q
110
W
VP3:
W
111
C
VP3:
S
112
E
VP3:
G
113
E
VP3:
L
115
I
VP3:
V
117
L
VP3:
T
118
V
VP3:
F
119
S
VP3:
F
159
V
Show more
Deletions
VP1
VP1:146
VP3
VP3:26-29, VP3:63-65, VP3:81, VP3:120, VP3:181
Insertions
VP1
ins_VP1:262:XXXXXXXXXXXXXXXXXXXXXXXRPALVVLPLL
VP3
ins_VP3:71:VSLSTS
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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