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LOC_000T2WJ.1
Download
Download FASTA
Download metadata TSV
Taiwan/LOC_000T2WJ.1/2000-02
H. Y. Wang,
K. C. Tsao,
C. H. Hsieh,
L. M. Huang,
T. Y. Lin,
G. W. Chen,
S. R. Shih,
L. Y. Chang &
L.-Y. Chang
National Taiwan University and Hospital, Department of Pediatrics
Sample details
Collection date
2000-02
Earliest release date
2010-12-11
Sampling location
Taiwan
Isolate name
TW-645-00
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2010-12-11
NCBI update date
2016-07-25
INSDC accession
HQ283495.1
Host
Host
human (Homo sapiens)
Submission details
Submission ID
HQ283495.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-20 10:39:16 UTC
Date released
2026-07-20 10:42:17 UTC
Clade
Clade EV-A71
B4
Genotype
Genotype
EV-A71
Alignment and QC
Total SNPs
696
Total inserted nucs
118
Total deleted nucs
1542
Total unknown nucs
248
Total frame shifts
5
Frame shifts
VP3:29-83(nt:1795-1961),VP3:109-119(nt:2037-2069),VP3:127-181(nt:2091-2255),VP3:197-242(nt:2301-2438),VP1:282-297(nt:3282-3329)
Length
2737 (52.8%)
Nucleotide mutations
Mutations called relative to the
U22521.1
reference
Substitutions
G
1776
C
C
1779
G
A
1784
G
T
1786
C
G
1787
T
C
1788
T
C
1789
G
C
1797
A
C
1799
G
C
1801
A
A
1803
T
C
1804
T
C
1811
T
A
1812
T
T
1814
C
A
1816
C
A
1818
G
T
1819
G
Show more
Deletions
1791-1794, 1806-1808, 2070, 2148-2153, 2418-2437, 3879-5386
Insertions
ins_1961:CACT, ins_2036:GTGG, ins_2090:CG, ins_2231:TATAG, ins_2255:TT, ins_2300:T, ins_3281:AACTCCATCGAACCGACCGGCACTAGTCGTACTGCCATTACTACCCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Amino acid substitutions
Substitutions called relative to the
U22521.1
reference
Substitutions
2A
2A:
T
26
N
2A:
N
57
D
2A:
R
68
K
2A:
Y
72
F
2A:
V
82
I
2A:
F
83
Y
2A:
E
102
A
2A:
S
129
N
3C
3C:
A
18
V
3C:
I
36
V
3C:
I
54
V
3C:
V
56
I
3C:
T
79
I
3C:
C
89
F
3C:
V
93
T
3C:
T
95
S
3C:
I
109
M
3C:
P
144
A
3C:
I
158
V
3C:
A
169
G
3C:
E
182
V
VP1
VP1:
K
18
R
VP1:
P
22
Q
VP1:
P
30
Q
VP1:
D
31
N
VP1:
K
43
E
VP1:
A
58
T
VP1:
K
98
E
VP1:
R
145
Q
VP1:
D
164
E
VP1:
D
167
E
VP1:
P
172
Q
VP1:
S
183
L
VP1:
S
184
T
VP1:
E
244
K
VP1:
S
246
P
VP1:
I
249
V
VP1:
S
275
A
VP3
VP3:
I
24
A
VP3:
L
25
M
VP3:
P
26
S
VP3:
V
85
I
VP3:
F
86
P
VP3:
R
87
A
VP3:
A
88
G
VP3:
P
90
R
VP3:
R
92
S
VP3:
D
93
G
VP3:
G
94
C
VP3:
P
95
A
VP3:
W
96
G
VP3:
Q
97
G
VP3:
S
98
L
VP3:
T
99
P
VP3:
L
104
P
VP3:
C
105
I
Show more
Deletions
VP3
VP3:27, VP3:28, VP3:101, VP3:120
Insertions
VP1
ins_VP1:297:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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