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LOC_000QGLW.1
Download
Download FASTA
Download metadata TSV
Tajikistan/LOC_000QGLW.1/2017-07-07
J. D'Addiego,
M. Mullojanova,
T. Hikmatov,
F. Tishkova &
R. Hewson
UK Health Security Agency, Research & Evaluation
Sample details
Collection date
2017-07-07
Earliest release date
2025-07-27
Sampling location
Tajikistan
Isolate name
CCHFV_C20
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-09 07:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2025-07-27
INSDC accession L segment
PV953854.1
INSDC accession M segment
PV953853.1
INSDC accession S segment
PV953852.1
Host
Host
human
Submission details
Submission ID
PV953854.1.L/PV953853.1.M/PV953852.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000QGLW.1.embl
Alignment and QC
Total SNPs S segment
216
Total inserted nucs S segment
8
Total ambiguous nucs S segment
15
Length S segment
1665 (90.9%)
Total SNPs L segment
1612
Total inserted nucs L segment
46
Total deleted nucs L segment
3
Total ambiguous nucs L segment
10
Total unknown nucs L segment
1
Length L segment
12128 (99.7%)
Total SNPs M segment
774
Total ambiguous nucs M segment
3
Total unknown nucs M segment
1
Length M segment
4490 (82.2%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
A
35
G
G
43
C
C
48
T
T
49
C
G
57
T
C
59
T
C
64
T
T
65
G
G
71
T
A
72
T
C
82
T
C
85
T
G
93
A
A
109
G
G
112
A
T
121
C
T
131
A
C
136
T
Show more
M segment
C
492
T
A
493
G
T
503
G
A
508
G
A
512
C
C
517
T
T
518
C
C
521
G
C
523
A
G
526
A
A
530
G
T
532
C
C
533
T
G
535
A
T
538
G
A
541
G
C
544
T
A
545
T
Show more
S segment
T
16
A
C
22
T
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
A
84
G
A
98
T
A
102
G
C
126
T
T
141
C
C
144
T
C
150
T
T
166
C
A
173
G
C
183
T
A
186
G
Show more
Deletions
L segment
11996, 12086, 12087
Insertions
L segment
ins_66:CC, ins_11931:AT, ins_12051:TAGTCCAATTCTTTCAAC, ins_12108:TYGATTATTTCTAGGGTGGGGGGA
S segment
ins_0:AAACACGT
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
S
139
A
GPC:
T
142
P
GPC:
Y
144
H
GPC:
P
145
A
GPC:
S
148
G
GPC:
T
153
S
GPC:
P
155
T
GPC:
K
156
G
GPC:
E
158
G
GPC:
T
160
A
GPC:
P
161
S
GPC:
S
164
T
GPC:
K
165
V
GPC:
S
166
P
GPC:
D
169
A
GPC:
N
170
G
GPC:
L
171
T
GPC:
A
172
G
Show more
NP
NP:
Y
20
F
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
G
83
D
RdRp:
L
90
I
RdRp:
I
114
V
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
T
200
A
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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