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LOC_000Q9NZ.1
Download
Download FASTA
Download metadata TSV
China/LOC_000Q9NZ.1/1984
A. Moming,
Q. Zhu,
Y. Bai,
J. Jin,
Q. Wu,
Z. Su,
S. Tang,
Y. Zhang,
S. Shen &
F. Deng
Wuhan Institute of Virology, Chinese Academy of Sciences
Sample details
Collection date
1984
Earliest release date
2024-12-21
Sampling location
China
Isolate name
BA84027
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-06-09 07:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
INSDC
NCBI release date
2024-12-21
INSDC accession L segment
OR823872.1
INSDC accession M segment
OR823875.1
INSDC accession S segment
OR823878.1
Host
Host
ticks
Submission details
Submission ID
OR823872.1.L/OR823875.1.M/OR823878.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-09 07:35:01 UTC
Date released
2026-06-09 07:39:42 UTC
Clade & Lineage
Closest reference L segment
singleReference (variant)
Closest reference M segment
M (MH396653.1) (variant)
Closest reference S segment
S1 (OL774851.1) (variant)
Files
Annotations
LOC_000Q9NZ.1.embl
Alignment and QC
Total SNPs S segment
248
Total inserted nucs S segment
67
Total deleted nucs S segment
36
Length S segment
1780 (96.8%)
Total SNPs L segment
1663
Total inserted nucs L segment
585
Length L segment
12693 (100%)
Total SNPs M segment
974
Total inserted nucs M segment
58
Length M segment
5233 (94.8%)
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
L segment
T
1
A
C
2
T
C
4
G
G
8
A
T
12
C
C
13
A
G
23
T
A
35
G
G
43
C
T
49
C
G
56
A
T
58
C
C
59
T
T
62
C
C
64
T
T
65
G
T
67
C
G
71
T
Show more
M segment
G
46
T
A
47
G
G
52
A
A
53
C
G
65
A
A
66
G
T
67
A
A
76
G
C
77
T
T
78
C
G
80
T
A
84
G
A
86
G
C
88
T
C
92
T
T
94
C
T
96
C
T
98
C
Show more
S segment
T
16
A
C
31
G
T
32
C
G
34
A
A
45
G
C
48
T
G
75
A
A
84
G
A
98
T
A
102
G
C
123
T
C
126
T
T
141
C
C
150
T
T
166
C
C
171
A
A
173
G
C
183
T
Show more
Deletions
S segment
1596, 1597, 1671-1696, 1727-1734
Insertions
L segment
ins_0:AGAGGCATTCTTCTCGTTCTCCTTTCACAAGTCCCAGTCCTTGCTTGGATGTCTCCCCTTCTCTAAACACCAGTACCAGTTTCAGTCAGAAGCTAAGTCCCTTCTCCAGAGTCACCTCCTTGAAATGGCAGGAGCAAAATGCAAGAACTGAAGATGGGGTTTACAAACCT, ins_16:TCCCTTGTGTGATGATGAAGAAAAGGATGCTCTTTTCTCTTTCACCCTAGGCCAACACTTAGG, ins_67:CC, ins_11928:TG, ins_12065:CAATTATTAGTTTGCCTT, ins_12089:TCACTATTCAT, ins_12108:TTATTTCCAGGGTGTGGGGGGAACGATTTCTTTTGTGAATTACGGTGGT...
Show more
M segment
ins_0:TCCCTCCCAGCCGGCAGTTTACAATGCTGCGAACTAAGGATCTCATCTGGACATTCTC
S segment
ins_0:CTTCTTGTTTCTTTCGTTTAAACACTTAAAGGGCTGTGCGGCAACGATATCTTCAAAGAAACACGT, ins_1514:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
MH396653.1
&
OL774851.1
references
Substitutions
GPC
GPC:
H
2
Y
GPC:
I
3
T
GPC:
S
4
P
GPC:
M
6
L
GPC:
Y
7
C
GPC:
F
10
L
GPC:
C
15
W
GPC:
G
16
S
GPC:
G
18
E
GPC:
K
19
G
GPC:
T
20
S
GPC:
N
21
H
GPC:
P
23
L
GPC:
H
24
S
GPC:
G
26
K
GPC:
E
28
Q
GPC:
N
30
S
GPC:
H
33
S
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NP
NP:
Y
20
F
NP:
D
44
E
NP:
K
45
R
NP:
D
116
E
NP:
N
150
H
NP:
Q
179
L
NP:
D
199
E
NP:
R
270
K
NP:
S
275
N
NP:
R
428
K
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
N
24
S
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
I
114
V
RdRp:
I
157
M
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Q
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
281
T
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L segment
M segment
S segment
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