This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1VT.1

Display Name: Cote_d'Ivoire/LOC_000Q1VT.1/2022-11-01
F. Hellhammer & S. C. Becker

Sample details

Collection date
2022-11-01
Collection date (lower bound)
2022-11-01
Collection date (upper bound)
2022-11-01
Earliest release date
2025-03-25
Collection country
Cote d'Ivoire
Isolate name
Z71

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:02insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Veterinary Medicine Hannover, Institute for Parasitology

INSDC

NCBI release date
2025-03-25
INSDC accession S

Alignment and QC metrics S

Length S
132
Total SNPs S
40
Total inserted nucs S
0
Total deleted nucs S
33
Total ambiguous nucs S
6
Total unknown nucs S
0
Total frame shifts S
1
Frame shifts S
NP:407-417(nt:1272-1305)
Completeness S
9.51%

Submission details

Submission ID
PV246041.1.S
Submitting group
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC

Lineage

Segment S Lineage
III

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T1243C
  • S:C1249A
  • S:A1251G
  • S:C1253A
  • S:C1254G
  • S:T1255G
  • S:G1256T
  • S:A1257G
  • S:G1259T
  • S:A1260T
  • S:C1275T
  • S:G1277C
  • S:A1283G
  • S:A1286G
  • S:G1288C
  • S:T1289C
  • S:C1290A
  • S:A1292T
    • Deletions
    S:1264-1271, S:1280-1282, S:1306-1327
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:P400R
  • NP:D401C
  • NP:D402F
    • Deletions
    NP:404-406, NP:418-424
    Insertions
    None

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