This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000Q1R1.1

Pakistan/LOC_000Q1R1.1/2017
M. Umair

National Institute of Health, Department of Virology

Sample details

Collection date
2017
Earliest release date
2022-01-12
Sampling location
Pakistan
Isolate name
NIH-235/Pakistan/2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2022-01-12
INSDC accession S segment

Host

Host

Submission details

Submission ID
MZ287856.1.S
Submitting group
Date submitted
2026-05-20 16:22:57 UTC
Date released
2026-05-20 16:26:41 UTC

Clade & Lineage

Closest reference S segment
S1 (OL774851.1) (variant)

Files

Annotations

Alignment and QC

Total SNPs S segment
33
Length S segment
248 (13.7%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 & OL774851.1 references

Substitutions

S segment

  • G276A
  • G282C
  • T287C
  • G306T
  • A309G
  • T318G
  • A321G
  • G330A
  • G339A
  • C342A
  • G351A
  • T354A
  • A378G
  • T387G
  • C390T
  • A393C
  • A405G
  • G409T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3 & OL774851.1 references

Substitutions

NP

  • NP:V83A
  • NP:D116E
  • NP:A124S
Deletions
N/A
Insertions
N/A

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