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LOC_000Q0N8.1
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Download FASTA
Download metadata TSV
Display Name: Armenia/LOC_000Q0N8.1/2022
A. Zhirova,
Y. Lisitskaya,
A. Volynkina,
A. Manucharyan &
G. Melik-Andreasyan
Sample details
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2025-03-02
Collection country
Armenia
Isolate name
371-ARM-TI-2022
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
Stavropol State Research Anti-Plague Institute, Laboratory for diagnostics of viral infections
INSDC
NCBI release date
2025-03-02
INSDC accession L
PQ878921.1
INSDC accession M
PQ878912.1
Host
Host taxon id
297308
Host name scientific
Ixodoidea
Alignment and QC metrics L
Length L
437
Total SNPs L
81
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
3.61%
Alignment and QC metrics M
Length M
435
Total SNPs M
122
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
0
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
8.11%
Submission details
Submission ID
PQ878921.1.L/PQ878912.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC
Files
Annotations
LOC_000Q0N8.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
124
G
L:
A
126
T
L:
T
131
A
L:
C
133
T
L:
A
135
G
L:
T
139
G
L:
T
154
C
L:
T
160
C
L:
T
163
C
L:
G
166
A
L:
G
172
T
L:
G
175
A
L:
G
178
C
L:
G
190
T
L:
T
214
A
L:
G
217
A
L:
T
218
C
L:
C
223
T
Show more
M
M:
A
4646
G
M:
T
4649
C
M:
A
4670
G
M:
C
4671
T
M:
A
4672
T
M:
C
4673
T
M:
A
4677
G
M:
A
4678
G
M:
G
4679
C
M:
C
4685
T
M:
T
4688
C
M:
A
4691
G
M:
A
4693
G
M:
A
4694
T
M:
A
4701
T
M:
A
4702
T
M:
T
4712
A
M:
A
4713
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
H
1527
F
GPC:
K
1529
G
GPC:
E
1534
G
GPC:
K
1537
L
GPC:
N
1541
D
GPC:
T
1542
A
GPC:
Q
1546
K
GPC:
S
1564
D
GPC:
T
1567
A
GPC:
A
1568
T
GPC:
A
1570
T
GPC:
S
1571
N
GPC:
E
1575
D
GPC:
V
1577
F
GPC:
V
1595
I
GPC:
F
1596
I
GPC:
M
1597
I
GPC:
F
1600
L
Show more
RdRp
RdRp:
Y
17
F
RdRp:
S
19
T
RdRp:
N
20
S
RdRp:
Q
34
H
RdRp:
K
53
E
RdRp:
H
56
P
RdRp:
S
57
T
RdRp:
Y
58
D
RdRp:
H
59
P
RdRp:
Y
60
H
RdRp:
S
67
V
RdRp:
Y
72
F
RdRp:
Q
74
L
RdRp:
R
80
K
RdRp:
S
85
D
RdRp:
L
90
I
RdRp:
L
94
M
RdRp:
G
113
N
RdRp:
I
114
V
RdRp:
D
135
E
Deletions
None
Insertions
None
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