This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000PZXT.1

India/LOC_000PZXT.1/2019
P. Yadav, A. Shete-Aich, D. Nyayanit & R. Sahay

National Institute of Virology, Maximum Containment Laboratory

Sample details

Collection date
2019
Earliest release date
2021-08-07
Sampling location
India (Gujarat State, Bhavnagar)
Isolate name
MCL-19-H-3154

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-20 16:23insdc_ingest_userOPEN
Data use terms URL

INSDC

NCBI release date
2021-08-07
INSDC accession L segment

Host

Host

Submission details

Submission ID
MW298535.1.L
Submitting group
Date submitted
2026-05-20 16:22:57 UTC
Date released
2026-05-20 16:26:41 UTC

Clade & Lineage

Closest reference L segment
singleReference (variant)

Files

Annotations

Alignment and QC

Total SNPs L segment
1563
Total inserted nucs L segment
2
Length L segment
11910 (98.3%)

Nucleotide mutations

Mutations called relative to the NC_005301.3 reference

Substitutions

L segment

  • T10C
  • G23T
  • A35G
  • G43C
  • C48T
  • T49C
  • C59T
  • C64T
  • T65G
  • G71T
  • A72T
  • C85T
  • G93A
  • A109G
  • G112A
  • T121C
  • T131A
  • C136T
Deletions
N/A
Insertions

L segment

ins_66:CC

Amino acid substitutions

Substitutions called relative to the NC_005301.3 reference

Substitutions

RdRp

  • RdRp:S6N
  • RdRp:S19T
  • RdRp:Y60N
  • RdRp:R63H
  • RdRp:S67V
  • RdRp:R80K
  • RdRp:V82I
  • RdRp:L90I
  • RdRp:I114V
  • RdRp:I157M
  • RdRp:T163V
  • RdRp:D164N
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:V214I
Deletions
N/A
Insertions
N/A

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