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LOC_000PYLG.1
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Download FASTA
Download metadata TSV
Display Name: Greece/LOC_000PYLG.1/1975
J. D'Addiego,
S. Shah,
N. Elaldi,
D. Allen &
R. Hewson
Sample details
Collection date
1975
Collection date (lower bound)
1975-01-01
Collection date (upper bound)
1975-12-31
Earliest release date
2024-10-26
Collection country
Greece
Isolate name
CCHFV_AP92
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
UK Health Security Agency, Research & Evaluation
INSDC
NCBI release date
2024-10-26
INSDC accession L
PP735375.1
INSDC accession M
PP735374.1
INSDC accession S
PP735373.1
Host
Host taxon id
9606
Host name scientific
Homo sapiens
Alignment and QC metrics L
Length L
5062
Total SNPs L
1137
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
19
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
41.65%
Alignment and QC metrics M
Length M
3055
Total SNPs M
739
Total inserted nucs M
0
Total deleted nucs M
0
Total ambiguous nucs M
9
Total unknown nucs M
0
Total frame shifts M
0
Completeness M
56.76%
Alignment and QC metrics S
Length S
1498
Total SNPs S
271
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
8
Total unknown nucs S
21
Total frame shifts S
0
Completeness S
87.86%
Submission details
Submission ID
PP735375.1.L/PP735374.1.M/PP735373.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC
Lineage
Segment S Lineage
VI
Files
Annotations
LOC_000PYLG.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
T
253
C
L:
T
254
A
L:
A
262
G
L:
G
264
A
L:
C
266
A
L:
C
271
T
L:
G
272
A
L:
G
274
A
L:
T
275
A
L:
G
277
A
L:
G
285
A
L:
G
289
A
L:
T
292
C
L:
C
295
T
L:
C
296
T
L:
A
297
T
L:
A
298
G
L:
G
301
T
Show more
M
M:
T
1271
C
M:
C
1275
T
M:
C
1283
T
M:
A
1284
G
M:
C
1286
T
M:
C
1292
T
M:
C
1298
T
M:
C
1306
T
M:
A
1307
G
M:
G
1310
A
M:
T
1312
C
M:
C
1313
T
M:
T
1314
G
M:
T
1315
A
M:
A
1319
G
M:
A
1322
T
M:
T
1325
C
M:
A
1328
T
Show more
S
S:
T
79
C
S:
A
81
G
S:
T
88
C
S:
G
91
T
S:
A
92
C
S:
A
109
G
S:
A
118
G
S:
A
130
G
S:
C
154
A
S:
C
160
T
S:
C
166
T
S:
G
169
A
S:
G
171
A
S:
T
175
G
S:
C
178
G
S:
T
181
C
S:
G
190
A
S:
T
198
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
398
V
GPC:
A
405
V
GPC:
I
407
T
GPC:
F
408
D
GPC:
E
410
D
GPC:
R
412
S
GPC:
V
414
L
GPC:
I
416
V
GPC:
L
427
I
GPC:
V
433
L
GPC:
I
445
T
GPC:
A
448
M
GPC:
V
449
I
GPC:
H
453
Q
GPC:
I
454
V
GPC:
Y
455
T
GPC:
V
459
T
GPC:
L
481
M
Show more
NP
NP:
N
9
S
NP:
E
12
D
NP:
M
13
L
NP:
S
39
N
NP:
F
48
Y
NP:
F
73
Y
NP:
A
100
T
NP:
G
101
S
NP:
V
117
I
NP:
T
124
S
NP:
G
125
S
NP:
V
141
I
NP:
A
146
T
NP:
V
163
L
NP:
M
164
V
NP:
S
165
P
NP:
L
179
I
NP:
V
198
I
Show more
RdRp
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
L
64
I
RdRp:
E
66
K
RdRp:
S
67
T
RdRp:
R
70
Q
RdRp:
Q
74
L
RdRp:
E
75
D
RdRp:
R
80
K
RdRp:
K
91
Q
RdRp:
L
94
S
RdRp:
A
122
T
RdRp:
S
124
N
RdRp:
D
135
E
RdRp:
I
157
V
RdRp:
F
161
L
RdRp:
T
165
A
RdRp:
E
167
G
Show more
Deletions
None
Insertions
None
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