This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.
X
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
Login
Loculus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Test Dummy Organism
Test organism (with files)
Ebola Sudan
Enterovirus
Test organism (without alignment)
West Nile Virus
SeqSets
Login
Docs
API docs
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
LOC_000PWC1.1
Download
Download FASTA
Download metadata TSV
Display Name: Kazakhstan/LOC_000PWC1.1/2022
T. I. Nurmakhanov,
N. A. Turebekov,
N. B. Tukhanova,
G. Z. Tokmurziyeva,
V. P. Sadovskaya &
A. B. Shevtsov
Sample details
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Earliest release date
2023-10-29
Collection country
Kazakhstan
Isolate name
74
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2025-11-10 19:02
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://#TODO-MVP/open
Authors
Author affiliations
National center for biotechnology, Kazakhstan, Laboratory of applied genetics
INSDC
NCBI release date
2023-10-29
INSDC accession L
OR633378.1
INSDC accession S
OR633376.1
Host
Host taxon id
1260755
Host name scientific
Hyalomma scupense
Alignment and QC metrics L
Length L
752
Total SNPs L
110
Total inserted nucs L
0
Total deleted nucs L
0
Total ambiguous nucs L
0
Total unknown nucs L
0
Total frame shifts L
0
Completeness L
6.21%
Alignment and QC metrics S
Length S
702
Total SNPs S
84
Total inserted nucs S
0
Total deleted nucs S
0
Total ambiguous nucs S
0
Total unknown nucs S
0
Total frame shifts S
0
Completeness S
41.99%
Submission details
Submission ID
OR633378.1.L/OR633376.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2025-11-10 19:02:11 UTC
Date released
2025-11-10 19:08:24 UTC
Lineage
Segment S Lineage
IV.1
Files
Annotations
LOC_000PWC1.1.embl
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
A
379
G
L:
A
385
T
L:
T
403
A
L:
A
416
G
L:
T
430
C
L:
T
442
A
L:
T
451
C
L:
T
466
C
L:
C
475
T
L:
C
481
T
L:
T
499
C
L:
C
505
T
L:
T
509
C
L:
G
511
A
L:
A
523
G
L:
G
538
T
L:
G
543
A
L:
T
550
G
Show more
S
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
G
76
A
S:
T
79
C
S:
C
82
T
S:
G
99
A
S:
A
109
G
S:
A
118
G
S:
G
136
A
S:
T
144
A
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
G
190
A
S:
G
196
A
S:
T
199
C
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
R
15
K
NP:
F
30
Y
NP:
V
83
A
NP:
S
105
L
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
RdRp
RdRp:
I
114
V
RdRp:
R
156
K
RdRp:
T
163
A
RdRp:
A
168
T
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
R
302
K
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue