LOC_000MNKY.1

USA/WA0949896/2023-08-17

Z. A. Barrand, C. L. Ridenour, A. N. Rivas, P. B. Hawkinson, B. K. Schmidt, M. Chan, H. Oltean, E. Keim, M. Gilbert, C. Curca, G. Mascarinas, C. Carlson, N. Flack, R. Mwashite, H. Aman, J. Lathi, G. Marovich, J. Che, M. Torres Alvarado, A. Black, P. Trinh & C. M. Hepp

Translational Genomics Research Institute, TGen-North

Sample details

Collection date

2023-08-17

Earliest release date

2025-06-25

Sampling location

USA (WA)

Isolate name

WA0949896

Data use terms

Changed	User	Data use terms
2026-05-20 16:22	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://#TODO-MVP/open

INSDC

NCBI release date

2025-06-25

NCBI update date

2025-07-18

INSDC accession

BioProject accession

BioSample accession

Raw reads accession

Host

mosquitos (Culex tarsalis)

Submission details

Submission ID

PV806632.1

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-20 16:22:01 UTC

Date released

2026-05-20 16:47:22 UTC

Lineage

Files

Annotations

LOC_000MNKY.1.embl

Alignment and QC

Total SNPs

Length

10302 (93.4%)

Amino Acid Mutations from founder clade

2K:L15M
NS2A:R188K
NS2B:A103V
NS3:T249P
NS4A:R41K
NS4A:V85T
NS4B:V106G
NS5:K177R
NS5:K314R
env:K93R
env:T123A
env:T126I
env:I159A
env:L412F
prM:V153G

Variant

True

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

C246T
C600T
A630G
C660T
G792A
T923G
C1119T
A1320G
A1333G
T1442C
C1465T
C1974T
A2097C
T2103C
C2200T
C2448T
C2466T
C2574T

Deletions

N/A

Insertions

N/A

Amino acid substitutions

Substitutions called relative to the NC_009942.1 reference