This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MM4W.1

Display Name: Croatia/LOC_000MM4W.1/2018-09-06
T. Vilibic-Cavlek, L. Barbic, A. Klobucar, M. Vucelja, M. Bogdanic, D. Sabadi, M. Kutlesa, B. Gjurasin, V. Stevanovic, M. Curman Posavec, L. Bjedov, M. Boljfetic, T. Jozic-Novinc, R. Skara, M. Tomljenovic, Z. Hruskar, M. Al-Mufleh, T. Potocnik-Hunjadi, I. Roncevic & V. Savic

Sample details

Collection date
2018-09-06
Collection date (lower bound)
2018-09-06
Collection date (upper bound)
2018-09-06
Earliest release date
2025-06-23
Collection country
Croatia
Collection subdivision level 1
Durdevac
Isolate name
WNV/HR/human/9896/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Croatian Veterinary Institute, Poultry Center

INSDC

NCBI release date
2025-06-23
NCBI update date
2025-06-23
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
940
Total SNPs
188
Total inserted nucs
0
Total deleted nucs
142
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
[{'cdsName': 'NS5', 'nucRel': {'begin': 2473, 'end': 2715}, 'nucAbs': [{'begin': 10153, 'end': 10395}], 'codon': {'begin': 825, 'end': 905}, 'gapsLeading': {'begin': 777, 'end': 825}, 'gapsTrailing': {'begin': 905, 'end': 905}}]
Completeness
9.81%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PV737696.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:05:53 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A9084C
  • G9087A
  • C9090T
  • G9093A
  • A9096C
  • C9114T
  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
    • Deletions
    10012-10153
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    NS5:778-825
    Insertions
    None

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