This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MM12.1

Display Name: Croatia/LOC_000MM12.1/2018-08-22
T. Vilibic-Cavlek, L. Barbic, A. Klobucar, M. Vucelja, M. Bogdanic, D. Sabadi, M. Kutlesa, B. Gjurasin, V. Stevanovic, M. Curman Posavec, L. Bjedov, M. Boljfetic, T. Jozic-Novinc, R. Skara, M. Tomljenovic, Z. Hruskar, M. Al-Mufleh, T. Potocnik-Hunjadi, I. Roncevic & V. Savic

Sample details

Collection date
2018-08-22
Collection date (lower bound)
2018-08-22
Collection date (upper bound)
2018-08-22
Earliest release date
2025-06-23
Collection country
Croatia
Collection subdivision level 1
Beli Manastir
Isolate name
WNV/HR/human/9476/2018

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Croatian Veterinary Institute, Poultry Center

INSDC

NCBI release date
2025-06-23
NCBI update date
2025-06-23
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
931
Total SNPs
185
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
8.44%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PV737693.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:05:53 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A9084C
  • G9087A
  • C9090T
  • G9093A
  • A9096C
  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    None
    Insertions
    None

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