This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000ML4X.1

Display Name: Croatia/LOC_000ML4X.1/2017-09-13
T. Vilibic-Cavlek, L. Barbic, A. Klobucar, M. Vucelja, M. Bogdanic, D. Sabadi, M. Kutlesa, B. Gjurasin, V. Stevanovic, M. Curman Posavec, L. Bjedov, M. Boljfetic, T. Jozic-Novinc, R. Skara, M. Tomljenovic, Z. Hruskar, M. Al-Mufleh, T. Potocnik-Hunjadi, I. Roncevic & V. Savic

Sample details

Collection date
2017-09-13
Collection date (lower bound)
2017-09-13
Collection date (upper bound)
2017-09-13
Earliest release date
2025-06-23
Collection country
Croatia
Collection subdivision level 1
Osijek
Isolate name
WNV/HR/human/9613/2017

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Croatian Veterinary Institute, Poultry Center

INSDC

NCBI release date
2025-06-23
NCBI update date
2025-06-23
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
866
Total SNPs
174
Total inserted nucs
0
Total deleted nucs
223
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS5:826-905(nt:10154-10395)
Completeness
9.87%
Total stop codons
0

Submission details

Submission ID
PV737688.1
Submitting group
Date submitted
2025-11-10 19:00:04 UTC
Date released
2025-11-10 19:18:52 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • T9159C
  • T9180G
  • A9183T
  • A9186G
  • T9204A
  • C9207T
  • G9216A
  • C9219A
  • C9222G
  • A9225G
  • A9228G
  • G9231T
  • T9234G
  • C9241T
  • C9244A
  • G9245A
  • T9246G
  • T9252C
    • Deletions
    9076-9156, 10012-10153
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS5

  • NS5:R522K
  • NS5:R527K
  • NS5:R546K
  • NS5:A569S
  • NS5:R590K
  • NS5:T641G
  • NS5:V740I
    • Deletions
    NS5:778-825
    Insertions
    None

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