This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MHNX.1

Display Name: USA/LOC_000MHNX.1/2022-09-29
J. Hyeon, Z. H. Helal, N. F. Soriano, D. H. Chung, A. Hunt & G. Risatti

Sample details

Collection date
2022-09-29
Collection date (lower bound)
2022-09-29
Collection date (upper bound)
2022-09-29
Earliest release date
2025-06-04
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
22_3902

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The University of Connecticut, Dept. of Pathobiology & Veterinary Science

INSDC

NCBI release date
2025-06-04
NCBI update date
2025-06-04
INSDC accession

Host

Host taxon id
Host name scientific
Buteo jamaicensis

Alignment and QC metrics

Length
10401
Total SNPs
128
Total inserted nucs
3
Total deleted nucs
368
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
97.62%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PV126614.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:05:53 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C340T
  • T375C
  • A407G
  • C435T
  • A630G
  • C745T
  • T891C
  • C969T
  • C1041A
  • C1065T
  • C1123T
  • C1170T
  • T1442C
  • C1465T
  • G1485A
  • C1626T
  • T1659C
  • G1662A
    • Deletions
    10398-10405, 10414-10418, 10426-10434, 10439-10498, 10505-10513, 10521-10532, 10545-10576, 10589-10595, 10602-10629, 10649-10668, 10681-10858
    Insertions
    ins_10421:G, ins_10644:TG

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:I236V

    • NS2A

  • NS2A:R188K

    • NS2B

  • NS2B:V120I

    • NS4B

  • NS4B:I240M

    • NS5

  • NS5:V49I

    • capsid

  • capsid:K104R

    • env

  • env:V159A
  • env:L167F
    • Deletions
    None
    Insertions
    None

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