This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MHMZ.1

Display Name: USA/LOC_000MHMZ.1/2022-09-29
J. Hyeon, Z. H. Helal, N. F. Soriano, D. H. Chung, A. Hunt & G. Risatti

Sample details

Collection date
2022-09-29
Collection date (lower bound)
2022-09-29
Collection date (upper bound)
2022-09-29
Earliest release date
2025-06-04
Collection country
USA
Collection subdivision level 1
Connecticut
Isolate name
22_3901

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
The University of Connecticut, Dept. of Pathobiology & Veterinary Science

INSDC

NCBI release date
2025-06-04
NCBI update date
2025-06-04
INSDC accession

Host

Host taxon id
Host name scientific
Falco peregrinus

Alignment and QC metrics

Length
10401
Total SNPs
131
Total inserted nucs
12
Total deleted nucs
123
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
0
Frame shifts
[]
Completeness
95.31%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PV126613.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:05:53 UTC

Lineage

Lineage
1A

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C315T
  • A630G
  • C687T
  • A939G
  • G1035A
  • G1365A
  • A1401G
  • T1442C
  • C1465T
  • C1470T
  • A1674G
  • C1707T
  • T1872C
  • T1965C
  • C2043T
  • A2097C
  • C2109T
  • C2200A
    • Deletions
    10398-10405, 10435-10442, 10447-10449, 10460, 10461, 10467-10477, 10498-10534, 10553-10606
    Insertions
    ins_10412:CAGA, ins_10419:TCG, ins_10490:GACAC

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS2A

  • NS2A:T52I
  • NS2A:L95F

    • NS3

  • NS3:S334T

    • NS4A

  • NS4A:V89A

    • NS4B

  • NS4B:S14I

    • env

  • env:V159A
  • env:L167F
  • env:L412I
    • Deletions
    None
    Insertions
    None

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