This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MGFD.1

Display Name: Spain/LOC_000MGFD.1/2024-07-31
M. Aguero, R. Villalba, M. J. Ruano, A. Lopez & B. Gomez

Sample details

Collection date
2024-07-31
Collection date (lower bound)
2024-07-31
Collection date (upper bound)
2024-07-31
Earliest release date
2025-03-08
Collection country
Spain
Collection subdivision level 1
Andalusia
Isolate name
SPA/2723-21/2024/brain

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-11-10 19:00insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Laboratorio Central de Veterinaria - Ministerio de Agricultura, Pesca y Alimentacion

INSDC

NCBI release date
2025-03-08
NCBI update date
2025-03-08
INSDC accession

Host

Host taxon id
Host name scientific
Aquila adalberti

Alignment and QC metrics

Length
174
Total SNPs
30
Total inserted nucs
0
Total deleted nucs
110
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
NS5:465-905(nt:9071-10395)
Completeness
2.58%
Total stop codons
0

Submission details

Submission ID
PV089519.1
Submitting group
Date submitted
2025-11-10 19:00:04 UTC
Date released
2025-11-10 19:17:48 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • C9072T
  • A9084C
  • G9087A
  • C9090T
  • G9093A
  • A9096C
  • C9123A
  • A9126G
  • T9129C
  • T9135C
  • C9144T
  • G9147A
  • G9153C
  • T9156A
  • T9159C
  • T9180G
  • A9183T
  • A9186G
    • Deletions
    8961-9070
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS5:428-464
    Insertions
    None

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