This is a demonstration environment. It may contain non-accurate test data and should not be used for real-world applications. Data will be deleted regularly.

LOC_000MDM3.1

Display Name: Hungary/LOC_000MDM3.1/2024
A. Nagy

Sample details

Collection date
2024
Collection date (lower bound)
2024-01-01
Collection date (upper bound)
2024-10-23
Earliest release date
2024-10-23
Collection country
Hungary
Collection subdivision level 1
Esztergom
Isolate name
8224_2024_WNV_HU

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2025-12-05 17:40insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

INSDC

NCBI release date
2024-10-23
NCBI update date
2024-10-23
INSDC accession

Host

Host taxon id
Host name scientific
Homo sapiens

Alignment and QC metrics

Length
426
Total SNPs
81
Total inserted nucs
0
Total deleted nucs
268
Total ambiguous nucs
0
Total unknown nucs
0
Total frame shifts
1
Frame shifts
[{'cdsName': 'NS3', 'nucRel': {'begin': 608, 'end': 1857}, 'nucAbs': [{'begin': 5219, 'end': 6468}], 'codon': {'begin': 203, 'end': 619}, 'gapsLeading': {'begin': 167, 'end': 203}, 'gapsTrailing': {'begin': 619, 'end': 619}}]
Completeness
6.29%
Stop codons
[]
Total stop codons
0

Submission details

Submission ID
PQ381116.1
Submitting group
Date submitted
2025-12-05 17:40:35 UTC
Date released
2025-12-05 18:05:53 UTC

Lineage

Lineage
2

Files

Annotations

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • G5112A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    5113-5219, 5637-5797
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions
    Deletions
    NS3:168-203
    Insertions
    None

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